1. Software for Qualitative Traits

(a). Hotelling T^2 Tests Based on Population Case Control Data

SAS Macro with Documentation (PDF format); Example file to run example Data.

(b). Hotelling T^2 Tests Based on Nuclear Trio Family Data

SAS Macro with Documentation (PDF format); Example file to run example Data.

(c). Hotelling T^2 Tests Based on Sib-ship Data

SAS Macro with Documentation (PDF format); Example file to run example Data.

2. Software for Quantitative Traits

(a). Combined Linkage and Association Mapping of Quantitative Trait Loci, CLAM_QTL

zip file, which includes CLAM_qtl and examples and Documentation (PDF format)

3. Software to Detect Positive Selection in the Human Genome

(a). Extended Homozygosity Score Test (EHST),

zip file, which includes C++ codes and Makefile and Documentation (PDF format)

An example of HapMap II data, YRI chromosome 2 legend data and YRI chromosome 2 haplotype phase data

(b). A Cross-population Extended Haplotype-based Homozygosity Score Test (xp-EHHST),

zip file, which includes C++ codes and Makefile and Documentation (PDF format)

An example of HapMap II data, CEU chromosome 2 legend data and CEU chromosome 2 haplotype phase data CHB+JPT chromosome 2 legend data and CHB+JPT chromosome 2 haplotype phase data