Publications -- David B. Dahl
- K. P. Lennox, D. B. Dahl, M. Vannucci, J. W. Tsai (2008), Density Estimation for Protein Conformation Angles Using a Bivariate von Mises Distribution and Bayesian Nonparametrics, submitted.
- D. B. Dahl, S. Crawford (2008), RinRuby: Accessing the R Interpreter from Pure Ruby, submitted. Complete paper. Software and website.
- D. B. Dahl (2008), Modal Clustering in a Class of Product Partition Models, submitted. Complete paper. Software. Based on an earlier technical report.
- S. Kim, D. B. Dahl, M. Vannucci (2008), Spike and Slab Dirichlet Process Prior for Multiple Hypothesis Testing in Random Effects Models, submitted.
- D. B. Dahl, Z. Bohannan, Q. Mo, M. Vannucci, J. W. Tsai (2008), Assessing Side-Chain Perturbations of the Protein Backbone: A Knowledge Based Classification of Residue Ramachandran Space, Journal of Molecular Biology, 378, 749-758.
Personal version, Publisher's version.
- D. B. Dahl, Q. Mo, M. Vannucci (2008), Simultaneous Inference for Multiple Testing and Clustering via a Dirichlet Process Mixture Model, Statistical Modelling: An International Journal, 8, 23-39. Complete paper, slides of talk, video of talk (ogg/theora), video of talk (mpeg-4) (from Third Erich L. Lehmann Symposium).
- D. B. Dahl (2007), Discussion of Jain and Neal's "Splitting and Merging Components of a Nonconjugate Dirichlet Process Mixture Model," Bayesian Analysis, 2, 473-478. Paper, discussion, and rejoinder.
- D. B. Dahl, M. A. Newton (2007), Multiple Hypothesis Testing by Clustering Treatment Effects, Journal of the American Statistical Association, 102, 517-526. Complete paper, see also the slides and video for paper below.
- S. Sengupta, J. A. den Boon, I.-H. Chen, M. A. Newton, D. B. Dahl, M. Chen, Y.-J. Cheng, W. H. Westra, C.-J. Chen, A. Hildesheim, B. Sugden, P. Ahlquist (2006), Genome-Wide Expression Profiling Reveals EBV-Associated Inhibition of MHC Class I Expression in Nasopharyngeal Carcinoma, Cancer Research, 66, 7999-8006.
- D. B. Dahl (2006), Model-Based Clustering for Expression Data via a Dirichlet Process Mixture Model, in Bayesian Inference for Gene Expression and Proteomics, Kim-Anh Do, Peter Müller, Marina Vannucci (Eds.), Cambridge University Press. Complete paper. Software implementing least-squares clustering.
- D. Kwon, S. Kim, D. B. Dahl, M. Swartz, M. Tadesse and M. Vannucci (2006), Identification of DNA Regulatory Motifs and Regulators by Integrating Gene Expression and Sequence Data, in Bayesian Inference for Gene Expression and Proteomics, Kim-Anh Do, Peter Müller, Marina Vannucci (Eds.), Cambridge University Press.
- M. A. Croft, A. Glasser, G. Heatley, J. McDonald, T. Ebbert, D. B. Dahl, N. V. Nadkarni, P. L. Kaufman (2006), Accommodative Ciliary Body and Lens Function in Rhesus Monkeys, I: Normal Lens, Zonule and Ciliary Process Configuration in the Iridectomized Eye, Investigative Ophthalmology and Visual Science, 47, 1076-1086.
- D. B. Dahl (2005), Sequentially-Allocated Merge-Split Sampler for Conjugate and Nonconjugate Dirichlet Process Mixture Models, Journal of Computational and Graphical Statistics, under revision. Complete paper. Based on an earlier technical report which only presents the conjugate version.
- J. A. Mattison, M. A. Croft, D. B. Dahl, G. S. Roth, M. A. Lane, D. K. Ingram, P. L. Kaufman (2005), Accommodative Function in Rhesus Monkeys: Effects of Aging and Calorie Restriction, Journal of the American Aging Association, 27, 59-67.
- S. Wamsley, B. T. Gabelt, D. B. Dahl, G. L. Case, R. W. Sherwood, C. A. May, M. R. Hernandez, P. L. Kaufman (2005), Vitreous Glutamate Concentration and Axon Loss in Monkeys with Experimental Glaucoma, Archives of Ophthalmology, 123, 64-70.
- N. Binkley, D. B. Dahl, T. Kawahara-Baccus, D. Krueger, R. J. Colman (2003), Bone Loss Assessment in Ovariectomized Rats Utilizing Two Dual-Energy X-Ray Absorptiometers, Journal of Bone and Mineral Research, 18, 370-375.
- N. T. Taylor, G. M. Burlingame, K. B. Kristensen, A. Fuhriman, J. Johansen,
D. B. Dahl (2001), A Survey of Mental Health Care Provider's and Managed Care Organization Attitudes Toward, Familiarity with, and Use of Group Interventions, International Journal of Group Psychotherapy, 51(2), 243-263.
- M. Lopez, N. L. Van Zeeland, D. B. Dahl, R. Weindruch, J. M. Aiken (2000), Cellular Phenotypes of Age-Associated Skeletal Muscle Mitochondrial Abnormalities in Rhesus Monkeys, Mutation Research, 452, 123-138.