Bayesian Analysis of gene expression Data

                        Bani K Mallick, David Gold, Veera Baladandayuthapani

Chapter 3

Data

Wachi Data

Codes

 Code from Lewin et al. (2006)

BAM (Section 3.4.2)

BRIDGE (Section 3.5)

Chapter 4

Codes

 BUM (Example 4.2)

Code used for Example 4.3

 BayesMix  (Example 4.4)

Chapter 5

Data

Hedenfalk data

Codes

Bayesian Probit Regression (Section 5.4.1)

BMARS code (Section 5.5.1)

Chapter 6

Data

Farmer Data (Example 6.2)

Klevecz data (Example 6.4)

Codes

 Gene set analysis

Code used for Example 6.1

Code used for Example 6.3

Bayesian Decomposition Software (Example 6.4)

Chapter 7

Data

Galactose data

Codes

MCLUST (Example 7.3)

GIMM (Example 7.4)

Chapter 8

Data

Melanoma Data (Example 8.4.4)

Codes

Bayes Discoverer