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Software
eCADS: Sofware to normalize
two-channel microarrays using the new efficient common array dye swap (eCADS)
method. eCADS removes intensity-dependent biases (like those seen
in so-called MA-plots) while accounting for the experimental design.
ClaNC: An implementation of
new methodology for classifying on the basis of high-throughput genomic
data, such as DNA microarray data.
EDGE: A comprehensive software
package for the significance analysis of DNA microarray experiments
(both standard and time course experiments), based on the new optimal
discovery procedure and time course methodology developed in the John
Storey research group at UW.
QValue: Software developed in
the John Storey research group at UW to estimate the q-values
corresponding to a list of p-values. The q-value of a test
measures the proportion of false positives incurred (the false discovery
rate) when that particular test is called significant.
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